Few baked goods can rival the refreshing, citrusy taste of lemon poppy seed muffins. These muffins strike the perfect balance between tangy lemon, subtle sweetness, and the delightful crunch of poppy seeds.
Whether you enjoy them for breakfast, a midday snack, or a light dessert, they always brighten your day. With a moist, tender crumb and a burst of citrus flavor, this recipe will quickly become a household favorite.

Why You’ll Love This Recipe
These lemon poppy seed muffins check all the boxes — bright, flavorful, and easy to make. What really sets them apart is the zesty lemon flavor. It brings a fresh, tangy kick that makes each bite feel light and refreshing, not overly sweet.
That citrus brightness pairs beautifully with the subtle crunch of poppy seeds, giving the muffins a texture that’s both soft and satisfying with a bit of contrast in every bite. They’re also a breeze to whip up. The ingredient list is simple and the prep is quick, so you can have fresh muffins out of the oven in no time, whether you’re baking on a lazy Sunday morning or squeezing it in before guests arrive.
These muffins are versatile, too — they’re just as perfect served warm with coffee at breakfast as they are packed in a lunchbox or enjoyed as a midday snack. Whether you’re feeding a crowd or just want a homemade treat, this recipe delivers every time.

Ingredients
To achieve the best flavor and texture, use fresh, high-quality ingredients.
Dry Ingredients:
- 2 cups all-purpose flour
- 1 tablespoon poppy seeds
- 1 teaspoon baking powder
- 1/2 teaspoon baking soda
- 1/2 teaspoon salt
Wet Ingredients:
- 3/4 cup granulated sugar
- 1/2 cup unsalted butter, melted
- 2 large eggs
- 1/2 cup plain Greek yogurt (or sour cream)
- 1/2 cup fresh lemon juice (about 2 lemons)
- 1 tablespoon lemon zest
- 1 teaspoon vanilla extract
- 1/2 cup milk
Optional Lemon Glaze:
- 1 cup powdered sugar
- 2 tablespoons fresh lemon juice
- 1/2 teaspoon lemon zest
Instructions
Step 1: Preheat the Oven
Set your oven to 350°F (175°C) and line a muffin tin with paper liners or lightly grease the cups.
Step 2: Prepare the Dry Ingredients
In a medium bowl, whisk together the flour, poppy seeds, baking powder, baking soda, and salt. This ensures even distribution of leavening agents and poppy seeds throughout the batter.

Step 3: Mix the Wet Ingredients
In a large bowl, whisk the sugar and melted butter until well combined. Add the eggs one at a time, beating well after each addition. Stir in the Greek yogurt, lemon juice, lemon zest, and vanilla extract until the mixture is smooth and well blended.

Step 4: Combine Wet and Dry Ingredients
Gradually add the dry ingredients to the wet mixture, alternating with the milk. Stir gently until just combined. Avoid overmixing, as this can make the muffins dense instead of light and fluffy.

Step 5: Fill the Muffin Tin
Spoon the batter into the muffin cups, filling each about three-quarters full. This allows space for the muffins to rise beautifully while baking.

Step 6: Bake the Muffins
Place the muffin tin in the preheated oven and bake for 18–22 minutes, or until a toothpick inserted into the center comes out clean. The tops should be slightly golden and spring back when touched lightly.
Step 7: Prepare the Lemon Glaze (Optional)
While the muffins cool, prepare the glaze by whisking together the powdered sugar, lemon juice, and lemon zest until smooth. Drizzle the glaze over the cooled muffins for an extra citrusy touch.

Step 8: Cool and Serve
Let the muffins cool in the tin for about 5 minutes, then transfer them to a wire rack to cool completely. Enjoy them fresh or store them for later!
Tips for the Best Lemon Poppy Seed Muffins
Getting the perfect lemon poppy seed muffin is all about a few simple techniques. First, always use fresh lemons. Bottled juice doesn’t come close to the vibrant, tangy flavor that fresh lemon juice and zest bring to the batter.
It’s what gives the muffins that bright, refreshing taste that stands out. When mixing your ingredients, be careful not to overmix the batter. Stir just until everything is combined — this helps keep the texture soft, light, and tender rather than dense. Also, don’t skip the step of bringing your ingredients to room temperature.
Butter, eggs, and yogurt blend more smoothly and evenly when not cold, which results in a more consistent bake. A lesser-known tip: let your batter rest for about 5 to 10 minutes before baking.
This short pause allows the ingredients to fully hydrate and leads to a slightly taller, fluffier muffin.
Storage and Freezing
To keep your muffins tasting fresh, store them in an airtight container at room temperature for up to three days. If you’d like them to last a bit longer, refrigerate them — they’ll stay good for up to a week.
For long-term storage, you can freeze the muffins in a sealed freezer bag or airtight container for up to three months. When you’re ready to enjoy them again, just let them thaw at room temperature or pop one in the microwave for 15–20 seconds to warm it up.
They’ll taste just as good as the day you baked them.
Pairing Suggestions
These muffins pair beautifully with a hot cup of coffee or tea, making them a great choice for breakfast or an afternoon treat. A latte or Earl Grey complements the citrusy notes especially well.
If you’re serving them for brunch, consider adding a side of fresh berries or a small bowl of Greek yogurt with honey to round things out. Whether you’re grabbing one on the go or sitting down to savor it, these muffins fit the moment.
Final Thoughts
This lemon poppy seed muffin recipe delivers a bakery-quality treat right from your own kitchen. With a moist crumb, vibrant lemon flavor, and crunchy poppy seeds, these muffins offer the perfect balance of taste and texture. Whether you enjoy them plain or with a lemon glaze, they are sure to become a favorite in your home.