Mornings can be hectic, but a nutritious breakfast makes all the difference. These cottage cheese egg muffins are perfect for busy mornings, meal prep, or even a quick snack.
They are high in protein, low in carbs, and packed with flavor. Plus, they are incredibly easy to make with just a handful of ingredients. Whether you need a post-workout snack or a wholesome breakfast for the entire family, this recipe has you covered.

Why You’ll Love These Cottage Cheese Egg Muffins
These cottage cheese egg muffins are the kind of recipe that makes healthy eating feel effortless. They’re made with simple, everyday ingredients — just eggs, cottage cheese, and a few seasonings you likely already have in your kitchen.
No special trips to the store, no complicated steps. What really makes them stand out is their high protein content. The combo of eggs and cottage cheese packs a serious punch, helping you stay full and energized throughout the morning. They’re also incredibly easy to customize. Whether you want to toss in some chopped spinach, bell peppers, cooked bacon, or fresh herbs, you can tailor them to your taste or use whatever you have on hand.
They’re perfect for meal prep, too — make a batch at the beginning of the week and you’ve got a quick, grab-and-go breakfast ready each day. Plus, they’re naturally low in carbs and fit perfectly into keto or low-carb diets without feeling like you’re sacrificing flavor or satisfaction.

Ingredients You’ll Need
These muffins come together with a handful of ingredients:
- 6 large eggs
- 1 cup cottage cheese (full-fat or low-fat) or feta
- ½ cup shredded cheddar cheese (or your favorite cheese)
- ¼ teaspoon salt
- ¼ teaspoon black pepper
- ½ teaspoon garlic powder
- ½ teaspoon onion powder
- ½ cup diced bell peppers (any color)
- ½ cup chopped spinach (or other leafy greens)
How to Make Cottage Cheese Egg Muffins
Step 1: Preheat the Oven
Preheat your oven to 375°F (190°C). Lightly grease a 12-cup muffin tin with non-stick spray or use silicone muffin liners for easy removal.
Step 2: Blend the Eggs and Cottage Cheese
For a smoother texture, blend eggs and cottage cheese in a blender or food processor for about 30 seconds until fully combined. This step ensures a creamy, fluffy consistency. If you prefer a chunkier texture, simply whisk them together in a mixing bowl.

Step 3: Add Seasonings and Cheese
Pour the egg mixture into a large mixing bowl. Stir in shredded cheese, salt, pepper, garlic powder, onion powder, and paprika. Mix until evenly combined.

Step 4: Fold in Vegetables and Meat
Gently fold in diced bell peppers, spinach, and cooked bacon or ham (if using). Stir until everything is well distributed.
Step 5: Fill the Muffin Tin
Divide the mixture evenly among the 12 muffin cups, filling each about ¾ full. The muffins will puff up slightly while baking, so leave a little space at the top.
Step 6: Bake
Place the muffin tin in the preheated oven and bake for 18–22 minutes, or until the egg muffins are set in the center and lightly golden around the edges.
Step 7: Cool and Serve
Once baked, remove the muffins from the oven and let them cool in the tin for 5 minutes. Use a butter knife to gently loosen the edges and transfer them to a wire rack to cool further. Enjoy them warm, or store them for later!

How to Store and Reheat
Keeping your cottage cheese egg muffins fresh and tasty is easy with a few simple storage tips. If you’re planning to eat them within the week, store the cooled muffins in an airtight container in the refrigerator.
They’ll stay good for up to five days, making them perfect for busy mornings. For longer storage, freeze them. Once they’ve cooled completely, place the muffins in a freezer-safe bag or container. They’ll keep well in the freezer for up to three months — just be sure to label them with the date.
When it’s time to reheat, you’ve got options. For a quick fix, pop one in the microwave and heat in 15–20 second intervals until warmed through. If you’re reheating a few at once or want to keep that slightly crispy edge, use the oven. Preheat to 300°F (150°C) and warm the muffins for about five minutes.
They’ll come out hot and just as satisfying as when they were first baked.
Variations and Add-Ins
One of the best things about these egg muffins is how easy they are to customize. Going vegetarian? Skip the meat and toss in some chopped mushrooms, diced tomatoes, zucchini, or any other veggies you like.
If you enjoy a bit of heat, add diced jalapeños or a pinch of red pepper flakes to spice things up. Not into cheddar? Try swapping in feta for a tangy twist, mozzarella for something milder, or pepper jack for a creamy, spicy option.
You can also bring in fresh flavor with herbs — chopped basil, parsley, or chives all work great and add a little something extra to every bite. Mix and match to keep things interesting all week long.
Frequently Asked Questions
Can I make these egg muffins dairy-free?
Yes! Replace cottage cheese with dairy-free alternatives like almond-based ricotta or a thick unsweetened plant-based yogurt. Skip the shredded cheese or use a dairy-free cheese substitute.
Why did my egg muffins deflate?
Egg muffins may shrink slightly as they cool. To minimize deflation, avoid overmixing and let them cool gradually at room temperature.
Can I make these muffins ahead of time?
Absolutely! These muffins are perfect for meal prep. Make a batch on Sunday, and you’ll have a quick breakfast ready all week.
Final Thoughts
Cottage cheese egg muffins are a nutritious, easy, and delicious breakfast option that fits into almost any diet. They’re great for meal prep, customizable, and packed with protein to keep you satisfied.
Whether you enjoy them fresh from the oven or reheat them for a quick breakfast, they’ll quickly become a staple in your routine.